P Sandeep Mallya

2023

Bioinformatic Analysis of miR-200b/429 and Hub Gene Network in Cervical Cancer

Shukla, V., Mallya, S., Adiga, D., Sriharikrishnaa, S., Chakrabarty, S. & Kabekkodu, S. P., 10-2023, In: Biochemical Genetics. 61, 5, p. 1898-1916 19 p.

Research output: Contribution to journal › Article › peer-review

Open Access

Exome sequencing of choreoacanthocytosis reveals novel mutations in VPS13A and co-mutation in modifier gene(s)

Chaudhari, S., Ware, A. P., Jasti, D. B., Gorthi, S. P., Acharya, L. P., Bhat, M., Mallya, S. & Satyamoorthy, K., 07-2023, In: Molecular Genetics and Genomics. 298, 4, p. 965-976 12 p.

Research output: Contribution to journal › Article › peer-review

Open Access

Integrated Bioinformatics Analysis Identifies Crucial Biochemical Processes Shared between Pancreatitis and Pancreatic Ductal Adenocarcinoma

Wagle, M. M., Kedige, A. R., Kabekkodu, S. P. & Mallya, S., 01-05-2023, In: Asian Pacific journal of cancer prevention : APJCP. 24, 5, p. 1601-1610 10 p.

Research output: Contribution to journal › Article › peer-review

Open Access

MiR-4521 perturbs FOXM1-mediated DNA damage response in breast cancer

Kuthethur, R., Adiga, D., Kandettu, A., Jerome, M. S., Mallya, S., Mumbrekar, K. D., Kabekkodu, S. P. & Chakrabarty, S., 2023, In: Frontiers in Molecular Biosciences. 10, 1131433.

Research output: Contribution to journal › Article › peer-review

Open Access

Moonlighting functions of the ubiquitin-like protein, Hub1/UBL-5

Kolathur, K. K., Mallya, S., Barve, S., Bojja, S. L. & Wagle, M. M., 09-2023, In: International Journal of Biochemistry and Cell Biology. 162, 106445.

Research output: Contribution to journal › Article › peer-review

Severe acute respiratory syndrome coronaviruses contributing to mitochondrial dysfunction: Implications for post-COVID complications

Prasada Kabekkodu, S., Chakrabarty, S., Jayaram, P., Mallya, S., Thangaraj, K., Singh, K. K. & Satyamoorthy, K., 03-2023, In: Mitochondrion. 69, p. 43-56 14 p.

Research output: Contribution to journal › Review article › peer-review

Open Access

2 Citations (Scopus)

2022

A Microfluidic Cancer-on-Chip Platform Predicts Drug Response Using Organotypic Tumor Slice Culture

Chakrabarty, S., Quiros-Solano, W. F., Kuijten, M. M. P., Haspels, B., Mallya, S., Lo, C. S. Y., Othman, A., Silvestri, C., van de Stolpe, A., Gaio, N., Odijk, H., van de Ven, M., de Ridder, C. M. A., van Weerden, W. M., Jonkers, J., Dekker, R., Taneja, N., Kanaar, R. & van Gent, D. C., 01-02-2022, In: Cancer Research. 82, 3, p. 510-520 11 p.

Research output: Contribution to journal › Article › peer-review

Open Access

14 Citations (Scopus)

A Novel TPM1 Mutation Causes Familial Hypertrophic Cardiomyopathy in an Indian Family: Genetic and Clinical Correlation

Kumar, P., Paramasivam, G., Devasia, T., Prabhu, M., Rai, M. K., Prakashini, K., Mallya, S., Reghunathan, D., Megha, A., Nayak, K. & Moka, R., 2022, (Accepted/In press) In: Indian Journal of Clinical Biochemistry.

Research output: Contribution to journal › Article › peer-review

Expression analysis and function of mitochondrial genome-encoded microRNAs

Kuthethur, R., Shukla, V., Mallya, S., Adiga, D., Kabekkodu, S. P., Ramachandra, L., Saxena, P. U. P., Satyamoorthy, K. & Chakrabarty, S., 15-04-2022, In: Journal of Cell Science. 135, 8

Research output: Contribution to journal › Article › peer-review

Open Access

7 Citations (Scopus)

Implications of genetic variations, differential gene expression, and allele-specific expression on metformin response in drug-naïve type 2 diabetes

Vohra, M., Sharma, A. R., Mallya, S., Prabhu, N. B., Jayaram, P., Nagri, S. K., Umakanth, S. & Rai, P. S., 2022, (Accepted/In press) In: Journal of Endocrinological Investigation.

Research output: Contribution to journal › Article › peer-review

Open Access

1 Citation (Scopus)

Salivary DNA methylation markers for cancer of oral cavity

Kabekkodu, S. P., Chakrabarty, S., Varghese, V. K., Ghosh, S., Radhakrishnan, R., Mallya, S. P. & Kudva, A., 2022, In: Cancer biomarkers : section A of Disease markers. 35, 3, p. 257-268 12 p.

Research output: Contribution to journal › Article › peer-review

2021

Analysis of Nuclear Encoded Mitochondrial Gene Networks in Cervical Cancer

Meneur, C., Eswaran, S., Adiga, D., Sriharikrishnaa, S., Nadeem, K. G., Mallya, S., Chakrabarty, S. & Kabekkodu, S. P., 06-2021, In: Asian Pacific Journal of Cancer Prevention. 22, 6, p. 1799-1811 13 p.

Research output: Contribution to journal › Article › peer-review

Open Access

9 Citations (Scopus)

Contribution of nuclear and mitochondrial gene mutations in mitochondrial encephalopathy, lactic acidosis, and stroke-like episodes (MELAS) syndrome

Chakrabarty, S., Govindaraj, P., Sankaran, B. P., Nagappa, M., Kabekkodu, S. P., Jayaram, P., Mallya, S., Deepha, S., Ponmalar, J. N. J., Arivinda, H. R., Meena, A. K., Jha, R. K., Sinha, S., Gayathri, N., Taly, A. B., Thangaraj, K. & Satyamoorthy, K., 06-2021, In: Journal of Neurology. 268, 6, p. 2192 - 2207

Research output: Contribution to journal › Article › peer-review

Open Access

17 Citations (Scopus)

2020

DINAX– a comprehensive database of inherited ataxias

Chaudhari, S., Naha, R., Mukherjee, S., Sharma, A., Jayaram, P., Mallya, S., Chakrabarty, S. & Satyamoorthy, K., 11-2020, In: Computers in Biology and Medicine. 126, 104000.

Research output: Contribution to journal › Article › peer-review

Hypoxia increases mutational load of breast cancer cells through frameshift mutations

Hassan Venkatesh, G., Bravo, P., Shaaban Moustafa Elsayed, W., Amirtharaj, F., Wojtas, B., Abou Khouzam, R., Hussein Nawafleh, H., Mallya, S., Satyamoorthy, K., Dessen, P., Rosselli, F., Thiery, J. & Chouaib, S., 01-01-2020, In: OncoImmunology. 9, 1, 1750750.

Research output: Contribution to journal › Article › peer-review

Open Access

19 Citations (Scopus)

2019

Enumeration of deregulated miRNAs in liquid and tissue biopsies of cervical cancer

Shukla, V., Varghese, V. K., Kabekkodu, S. P., Mallya, S., Chakrabarty, S., Jayaram, P., Pandey, D., Banerjee, S., Sharan, K. & Satyamoorthy, K., 01-10-2019, In: Gynecologic Oncology.

Research output: Contribution to journal › Article › peer-review

21 Citations (Scopus)

Host and MTB genome encoded miRNA markers for diagnosis of tuberculosis

Chakrabarty, S., Kumar, A., Raviprasad, K., Mallya, S., Satyamoorthy, K. & Chawla, K., 01-05-2019, In: Tuberculosis. 116, p. 37-43 7 p.

Research output: Contribution to journal › Article › peer-review

27 Citations (Scopus)

Whole mitochondria genome mutational spectrum in occupationally exposed lead subjects

Mani, M. S., Chakrabarty, S., Mallya, S. P., Kabekkodu, S. P., Jayaram, P., Varghese, V. K., Dsouza, H. S. & Satyamoorthy, K., 01-09-2019, In: Mitochondrion. 48, p. 60-66 7 p.

Research output: Contribution to journal › Article › peer-review

8 Citations (Scopus)

2017

Aberrant gene-specific DNA methylation signature analysis in cervical cancer

Bhat, S., Kabekkodu, S. P., Varghese, V. K., Chakrabarty, S., Mallya, S. P., Rotti, H., Pandey, D., Kushtagi, P. & Satyamoorthy, K., 01-03-2017, In: Tumor Biology. 39, 3

Research output: Contribution to journal › Article › peer-review

41 Citations (Scopus)

A compilation of Web-based research tools for miRNA analysis

Shukla, V., Varghese, V. K., Kabekkodu, S. P., Mallya, S. & Satyamoorthy, K., 01-09-2017, In: Briefings in Functional Genomics. 16, 5, p. 249-273 25 p.

Research output: Contribution to journal › Review article › peer-review

32 Citations (Scopus)

Complete genome sequences of the endophytic Streptomyces sp. strains LUP30 and LUP47B, isolated from lucerne plants

Franco, C. M. M., Adetutu, E. M., Le, H. X., Ballard, R. A., Araujo, R., Tobe, S. S., Paul, B., Mallya, S. & Satyamoorthy, K., 2017, In: Genome Announcements. 5, 24, e00556-17.

Research output: Contribution to journal › Article › peer-review

5 Citations (Scopus)

2016

Complete genome sequences of the endophytic Streptomyces strains EN16, EN23, and EN27, isolated from wheat plants

Franco, C. M. M., Araujo, R., Adetutu, E., Tobe, S. S., Mallya, S., Paul, B. & Satyamoorthy, K., 01-11-2016, In: Genome Announcements. 4, 6, e01342-16.

Research output: Contribution to journal › Article › peer-review

6 Citations (Scopus)

DNA methylation detection at single base resolution using targeted next generation bisulfite sequencing and cross validation using capillary sequencing

Bhat, S., Mallya, S., Varghese, V. K., Jayaram, P., Chakrabarty, S., Joshi, K. S., Nesari, T. M. & Satyamoorthy, K., 15-12-2016, In: Gene. 594, 2, p. 259-267 9 p.

Research output: Contribution to journal › Article › peer-review

5 Citations (Scopus)

2015

DNA methylation analysis of phenotype specific stratified Indian population

Rotti, H., Mallya, S., Kabekkodu, P. S., Chakrabarty, S., Bhale, S., Bharadwaj, R., Bhat, B. K., Dedge, A. P., Dhumal, R. V., Gangadharan, G. G., Gopinath, P. M., Govindaraj, P., Joshi, K. S., Kondaiah, P., Nair, S., Nair, S. N. S., Nayak, J., Prasanna, B. V., Shintre, P., Sule, M., & 4 othersThangaraj, K., Patwardhan, B., Valiathan, V. M. & Satyamoorthy, K., 08-05-2015, In: Journal of Translational Medicine. 13, 1, 151.

Research output: Contribution to journal › Article › peer-review

35 Citations (Scopus)

Genome Sequence of a Burkholderia pseudomallei clinical isolate from a patient with community-acquired pneumonia and septicemia

Mukhopadhyay, C., Vandana, K. E., Chaitanya, T. A. K., Shaw, T., Bhat, H. V., Chakrabarty, S., Paul, B., Mallya, S., Murali, T. S. & Satyamoorthy, K., 01-07-2015, In: Genome Announcements. 3, 4, e0091515.

Research output: Contribution to journal › Article › peer-review

3 Citations (Scopus)

2014

Immunophenotyping of normal individuals classified on the basis of human dosha prakriti

Rotti, H., Guruprasad, K. P., Nayak, J., Kabekkodu, S. P., Kukreja, H., Mallya, S., Nayak, J., Bhradwaj, R. C., Gangadharan, G. G., Prasanna, B. V., Raval, R., Kamath, A., Gopinath, P. M., Kondaiah, P. & Satyamoorthy, K., 01-2014, In: Journal of Ayurveda and Integrative Medicine. 5, 1, p. 43-9 7 p.

Research output: Contribution to journal › Article › peer-review

Open Access

Mitochondrial DNA variation analysis in cervical cancer

Kabekkodu, S. P., Bhat, S., Mascarenhas, R., Mallya, S., Bhat, M., Pandey, D., Kushtagi, P., Thangaraj, K., Gopinath, P. M. & Satyamoorthy, K., 2014, In: Mitochondrion. 16, p. 73-82 10 p.

Research output: Contribution to journal › Article › peer-review

31 Citations (Scopus)

P Sandeep Mallya

Research output

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