TY - JOUR
T1 - Automatic liver tumor segmentation on multiphase computed tomography volume using SegNet deep neural network and K-means clustering
AU - Pattwakkar, Vaidehi Nayantara
AU - Kamath, Surekha
AU - Kanabagatte Nanjundappa, Manjunath
AU - Kadavigere, Rajagopal
N1 - Funding Information:
This work was supported by KSTePS, DST, Government of Karnataka, India (No. DST/KSTePS/Ph.D. Fellowship/ENG-02: 2019-20/419/19). We are grateful to Manipal Institute of Technology, MAHE, Manipal for providing the facilities to carry out the research and KMC, Manipal for providing the images.
Funding Information:
This work was supported by KSTePS, DST, Government of Karnataka, India (No. DST/KSTePS/Ph.D. Fellowship/ENG‐02: 2019‐20/419/19). We are grateful to Manipal Institute of Technology, MAHE, Manipal for providing the facilities to carry out the research and KMC, Manipal for providing the images.
Publisher Copyright:
© 2022 Wiley Periodicals LLC.
PY - 2023/3
Y1 - 2023/3
N2 - Liver and liver tumor segmentations are essential in computer-aided systems for diagnosing liver tumors. These systems must operate on multiphase computed tomography (CT) images instead of a single phase for accurate diagnosis for clinical applications. We have proposed a framework that can perform segmentation from quadriphasic CT data. The liver was segmented using a fine-tuned SegNet model and the liver tumor was segmented using the K-means clustering method coupled with a power-law transformation-based image enhancement technique. The best values for liver segmentation achieved were: Dice Coefficient = 96.46 ± 0.48%, Jaccard Index = 93.16 ± 0.89%, volumetric overlap error = 6.84 ± 0.89% and average symmetric surface distance = 0.59 ± 0.3 mm and the results for liver tumor delineation were Dice Coefficient = 85.07 ± 4.5%, Jaccard Index = 74.29 ± 6.8%, volumetric overlap error = 25.71 ± 6.8% and average symmetric surface distance = 1.14 ± 1.3 mm. The proposed liver segmentation method based on deep learning is fully automatic, robust, and effective for all phases. The image enhancement technique has shown promising results and aided in better liver tumor segmentation. The liver tumors were segmented satisfactorily; however, improvements concerning false positive reduction can further increase the accuracy.
AB - Liver and liver tumor segmentations are essential in computer-aided systems for diagnosing liver tumors. These systems must operate on multiphase computed tomography (CT) images instead of a single phase for accurate diagnosis for clinical applications. We have proposed a framework that can perform segmentation from quadriphasic CT data. The liver was segmented using a fine-tuned SegNet model and the liver tumor was segmented using the K-means clustering method coupled with a power-law transformation-based image enhancement technique. The best values for liver segmentation achieved were: Dice Coefficient = 96.46 ± 0.48%, Jaccard Index = 93.16 ± 0.89%, volumetric overlap error = 6.84 ± 0.89% and average symmetric surface distance = 0.59 ± 0.3 mm and the results for liver tumor delineation were Dice Coefficient = 85.07 ± 4.5%, Jaccard Index = 74.29 ± 6.8%, volumetric overlap error = 25.71 ± 6.8% and average symmetric surface distance = 1.14 ± 1.3 mm. The proposed liver segmentation method based on deep learning is fully automatic, robust, and effective for all phases. The image enhancement technique has shown promising results and aided in better liver tumor segmentation. The liver tumors were segmented satisfactorily; however, improvements concerning false positive reduction can further increase the accuracy.
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U2 - 10.1002/ima.22816
DO - 10.1002/ima.22816
M3 - Article
AN - SCOPUS:85139425854
SN - 0899-9457
VL - 33
SP - 729
EP - 745
JO - International Journal of Imaging Systems and Technology
JF - International Journal of Imaging Systems and Technology
IS - 2
ER -