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Conditional Tabular Generative Adversarial Network Based Clinical Data Augmentation for Enhanced Predictive Modeling in Chronic Kidney Disease Diagnosis

  • Princy Randhawa
  • , Veerendra Nath Jasthi
  • , Kumar Piyush
  • , Gireesh Kumar Kaushik
  • , Malathy Batamulay
  • , S. N. Prasad
  • , Manish Rawat
  • , Kiran Veernapu
  • , Nithesh Naik*
  • *Corresponding author for this work

Research output: Contribution to journalArticlepeer-review

Abstract

The lack of clinical data for chronic kidney disease (CKD) prediction frequently results in model overfitting and inadequate generalization to novel samples. This research mitigates this constraint by utilizing a Conditional Tabular Generative Adversarial Network (CTGAN) to enhance a constrained CKD dataset sourced from the University of California, Irvine (UCI) Machine Learning Repository. The CTGAN model was trained to produce realistic synthetic samples that preserve the statistical and feature distributions of the original dataset. Multiple machine learning models, such as AdaBoost, Random Forest, Gradient Boosting, and K-Nearest Neighbors (KNN), were assessed on both the original and enhanced datasets with incrementally increasing degrees of synthetic data dilution. AdaBoost attained 100% accuracy on the original dataset, signifying considerable overfitting; however, the model exhibited enhanced generalization and stability with the CTGAN-augmented data. The occurrence of 100% test accuracy in several models should not be interpreted as realistic clinical performance. Instead, it reflects the limited size, clean structure, and highly separable feature distributions of the UCI CKD dataset. Similar behavior has been reported in multiple previous studies using this dataset. Such perfect accuracy is a strong indication of overfitting and limited generalizability, rather than feature or label leakage. This observation directly motivates the need for controlled data augmentation to introduce variability and improve model robustness. The dataset with the greatest dilution, comprising 2000 synthetic cases, attained a test accuracy of 95.27% utilizing a stochastic gradient boosting approach. Ensemble learning techniques, particularly gradient boosting and random forest, regularly surpassed conventional models like KNN in terms of predicted accuracy and resilience. The results demonstrate that CTGAN-based data augmentation introduces critical variability, diminishes model bias, and serves as an effective regularization technique. This method provides a viable alternative for reducing overfitting and improving predictive modeling accuracy in data-deficient medical fields, such as chronic kidney disease diagnosis.

Original languageEnglish
Article number6
JournalBioMedInformatics
Volume6
Issue number1
DOIs
Publication statusPublished - 02-2026

All Science Journal Classification (ASJC) codes

  • Computer Science (miscellaneous)
  • Medicine (miscellaneous)
  • Health Professions (miscellaneous)
  • Health Informatics

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