TY - JOUR
T1 - Fluorescence and Photoacoustic Spectroscopy-Based Assessment of Mitochondrial Dysfunction in Oral Cancer Together with Machine Learning
T2 - A Pilot Study
AU - Raghushaker, Chandavalli Ramappa
AU - Rodrigues, Jackson
AU - Nayak, Subramanya G.
AU - Ray, Satadru
AU - Urala, Arun S.
AU - Satyamoorthy, Kapaettu
AU - Mahato, Krishna Kishore
N1 - Funding Information:
The authors would like to thank Manipal Academy of Higher Education, Manipal, India, TIFAC-CORE in Pharmacogenomics, DST, Government of India, BiSEP, Government of Karnataka, and Manipal School of Life Sciences for infrastructure facilities. Author K.K.M. would like to thank the SERB, Department of Science and Technology, Government of India (FILE NO. EMR/2016/007700) and the Department of Biotechnology, Government of India (Sanction ID: BT/PR14776/MED/32/460/2015) for the financial support. C.R.R. would like to thank Manipal Academy of Higher Education for providing financial support under Dr. TMA Pai Structured Ph.D. Scheme and the Indian Council of Medical Research (ICMR), Government of India, for providing Senior Research Fellowship (Sanction no.: 5/3/8/60/ITR-F/2018-ITR, IRIS Cell No. 2017-3967). J.R. would like to thank the Indian Council of Medical Research (ICMR), Government of India, for providing Senior Research Fellowship (Sanction no.: 5/3/8/45/ITR-F/2019-ITR, IRIS Cell No. 2019-5005).
Publisher Copyright:
© 2021 American Chemical Society.
PY - 2021/12/14
Y1 - 2021/12/14
N2 - The current study reports an integrated approach of machine learning and tryptophan fluorescence and photoacoustic spectral properties to assess the mitochondrial status under oral pathological conditions. The mitochondria in the study were isolated from oral cancer tissues and adjacent normal counterparts, and the corresponding fluorescence and photoacoustic spectra of tryptophan were recorded at 281 nm pulsed laser excitations. A set of features were selected from the pre-processed spectra and were used to classify the data using support vector machine (SVM) learning in the MATLAB platform. SVM analysis demonstrated clear differentiation between mitochondria isolated from normal and cancer tissues for fluorescence (sensitivity, 86.6%; specificity, 90%) and photoacoustic (sensitivity, 86.6%; specificity, 96.6%) measurements. Further investigation into the influence of change in protein conformation on the nature of tryptophan spectral properties was evaluated by 8-anilino-1-naphthalene sulfonic acid (ANS) fluorescence assay. The impact of protein structural changes on the mitochondrial functions was also estimated by mitochondrial membrane potential (MMP), reactive oxygen species (ROS), and cytochrome c oxidase (COX) assays, suggesting an altered mitochondrial function. The findings indicate that tryptophan fluorescence and photoacoustic spectral properties together with machine learning algorithms may delineate the mitochondrial functional status in vitro, indicating its translational potential.
AB - The current study reports an integrated approach of machine learning and tryptophan fluorescence and photoacoustic spectral properties to assess the mitochondrial status under oral pathological conditions. The mitochondria in the study were isolated from oral cancer tissues and adjacent normal counterparts, and the corresponding fluorescence and photoacoustic spectra of tryptophan were recorded at 281 nm pulsed laser excitations. A set of features were selected from the pre-processed spectra and were used to classify the data using support vector machine (SVM) learning in the MATLAB platform. SVM analysis demonstrated clear differentiation between mitochondria isolated from normal and cancer tissues for fluorescence (sensitivity, 86.6%; specificity, 90%) and photoacoustic (sensitivity, 86.6%; specificity, 96.6%) measurements. Further investigation into the influence of change in protein conformation on the nature of tryptophan spectral properties was evaluated by 8-anilino-1-naphthalene sulfonic acid (ANS) fluorescence assay. The impact of protein structural changes on the mitochondrial functions was also estimated by mitochondrial membrane potential (MMP), reactive oxygen species (ROS), and cytochrome c oxidase (COX) assays, suggesting an altered mitochondrial function. The findings indicate that tryptophan fluorescence and photoacoustic spectral properties together with machine learning algorithms may delineate the mitochondrial functional status in vitro, indicating its translational potential.
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U2 - 10.1021/acs.analchem.1c03650
DO - 10.1021/acs.analchem.1c03650
M3 - Article
AN - SCOPUS:85120911842
SN - 0003-2700
JO - Analytical Chemistry
JF - Analytical Chemistry
ER -