TY - JOUR
T1 - Integrated bioinformatic analysis to understand the association between phthalate exposure and breast cancer progression
AU - Khan, Nadeem G.
AU - Eswaran, Sangavi
AU - Adiga, Divya
AU - Sriharikrishnaa, S.
AU - Chakrabarty, Sanjiban
AU - Rai, Padmalatha S.
AU - Kabekkodu, Shama Prasada
N1 - Funding Information:
We acknowledge the Directorate of Minorities Fellowship (DOM/FELLOWSHIP/CR-10/2019-20), Government of Karnataka; ICMR-Senior Research fellowship (Reference ID-2019/4115/CMB/BMS and 2020/8704/CMB/BMS), and Dr. TMA Pai Structured Ph.D. fellowship, MAHE. All the authors thank Manipal Academy of Higher Education, Manipal, Technology Information Forecasting and Assessment Council (TIFAC)-Core in Pharmacogenomics at MAHE, Manipal, Fund for Improvement of S&T Infrastructure (FIST), and Karnataka Fund for Infrastructure Strengthening in Science and Technology (K-FIST), Government of Karnataka.
Funding Information:
We received support from MATRICS, the Science and Engineering Research Board (SERB), the Department of Science and Technology (DST), Government of India.
Publisher Copyright:
© 2022 Elsevier Inc.
PY - 2022/12/15
Y1 - 2022/12/15
N2 - Phthalates have been extensively used as plasticizers while manufacturing plastic-based consumer products. Estradiol mimicking properties and association studies suggest phthalates may contribute to breast cancer (BC). We performed an in-silico analysis and functional studies to understand the association between phthalate exposure and BC progression. Search for phthalate-responsive genes using the comparative toxicogenomics database identified 20 genes as commonly altered in response to multiple phthalates exposure. Of the 20 genes, 12 were significantly differentially expressed between normal and BC samples. In BC samples, 9 out of 20 genes showed a negative correlation between promoter methylation and its expression. AHR, BAX, BCL2, CAT, ESR2, IL6, and PTGS2 expression differed significantly between metastatic and non-metastatic BC samples. Gene set enrichment analysis identified metabolism, ATP-binding cassette transporters, insulin signaling, and type II diabetes as highly enriched pathways. The diagnostic assessment based on 20 genes expression suggested a sensitivity and a specificity >0.91. The aberrantly expressed phthalate interactive gene influenced the overall survival of BC patients. Drug-gene interaction analysis identified 14 genes and 523 candidate drugs, including 19 BC treatment-approved drugs. Di(2-ethylhexyl) phthlate (DEHP) exposure increased the growth, proliferation, and migration of MCF-7 and MDA-MB-231 cells in-vitro. DEHP exposure induced morphological changes, actin cytoskeletal remodeling, increased ROS content, reduced basal level lipid peroxidation, and induced epithelial to mesenchymal transition (EMT). The present approach can help to explore the potentially damaging effects of environmental agents on cancer risk and understand the underlined pathways and molecular mechanisms.
AB - Phthalates have been extensively used as plasticizers while manufacturing plastic-based consumer products. Estradiol mimicking properties and association studies suggest phthalates may contribute to breast cancer (BC). We performed an in-silico analysis and functional studies to understand the association between phthalate exposure and BC progression. Search for phthalate-responsive genes using the comparative toxicogenomics database identified 20 genes as commonly altered in response to multiple phthalates exposure. Of the 20 genes, 12 were significantly differentially expressed between normal and BC samples. In BC samples, 9 out of 20 genes showed a negative correlation between promoter methylation and its expression. AHR, BAX, BCL2, CAT, ESR2, IL6, and PTGS2 expression differed significantly between metastatic and non-metastatic BC samples. Gene set enrichment analysis identified metabolism, ATP-binding cassette transporters, insulin signaling, and type II diabetes as highly enriched pathways. The diagnostic assessment based on 20 genes expression suggested a sensitivity and a specificity >0.91. The aberrantly expressed phthalate interactive gene influenced the overall survival of BC patients. Drug-gene interaction analysis identified 14 genes and 523 candidate drugs, including 19 BC treatment-approved drugs. Di(2-ethylhexyl) phthlate (DEHP) exposure increased the growth, proliferation, and migration of MCF-7 and MDA-MB-231 cells in-vitro. DEHP exposure induced morphological changes, actin cytoskeletal remodeling, increased ROS content, reduced basal level lipid peroxidation, and induced epithelial to mesenchymal transition (EMT). The present approach can help to explore the potentially damaging effects of environmental agents on cancer risk and understand the underlined pathways and molecular mechanisms.
UR - https://www.scopus.com/pages/publications/85141332687
UR - https://www.scopus.com/pages/publications/85141332687#tab=citedBy
U2 - 10.1016/j.taap.2022.116296
DO - 10.1016/j.taap.2022.116296
M3 - Article
C2 - 36328110
AN - SCOPUS:85141332687
SN - 0041-008X
VL - 457
JO - Toxicology and Applied Pharmacology
JF - Toxicology and Applied Pharmacology
M1 - 116296
ER -